Related by context. All words. (Click for frequent words.) 73 exon 69 nucleotide sequence 68 intergenic 68 RNA sequences 67 coding sequences 67 untranslated regions 67 noncoding 67 segmental duplications 67 nucleotide sequences 66 introns 66 UTRs 66 RNA transcripts 66 mRNAs 66 miRNAs 66 extracellular domains 66 splice junctions 66 alternatively spliced 65 coding exons 65 mRNA molecules 65 pseudogenes 65 heterochromatin 65 mRNA 65 mRNA transcripts 64 yeast genome 64 amplicons 64 messenger RNAs 64 amino acid residues 64 messenger RNA 64 euchromatin 64 #S rRNA 64 paralogs 64 contigs 64 heterochromatic 63 non coding RNA 63 RNA splicing 63 cDNAs 63 mRNA sequences 63 rRNA 63 messenger RNA mRNA 63 intronic 63 splice variants 63 ssDNA 63 genes encoding 63 homologs 63 cysteine residues 63 intron 63 indels 63 kilobase 63 shRNAs 63 endonuclease 63 intergenic regions 63 isoforms 63 codons 63 HOTAIR 63 Alu elements 63 cDNA 62 RNA molecules 62 coding genes 62 gp# [002] 62 genomic loci 62 miRNA genes 62 amplicon 62 alternative splicing 62 ribonucleic acid RNA 62 RNAs 62 ribosomal DNA 62 transcriptome 62 unmethylated 62 viral genome 62 haplotypes 62 telomeric 62 micro RNA 62 antisense strand 62 chromatin structure 62 centrosome 62 nucleotides 62 At#g# 62 3'UTR 62 loci 62 chromosomal DNA 62 MLL gene 62 short hairpin RNAs 62 polyadenylation 62 histone proteins 62 miRNA 62 mitochondrial gene 61 polynucleotide 61 noncoding RNAs 61 proteolytic cleavage 61 messenger RNAs mRNAs 61 genomic DNA 61 chromosome 61 chromosomal regions 61 dystrophin gene 61 ncRNAs 61 constitutively 61 RNA molecule 61 DNA sequences 61 TAp# 61 epitopes 61 protein coding 61 MAPK pathway 61 amino acid sequence 61 substrate specificity 61 chromosomes 61 operons 61 glycoproteins 61 splice variant 61 gene rearrangements 61 eukaryotic cells 61 Supplementary Fig 61 protein isoforms 61 exome 61 histone modifications 61 miRNA expression 61 Arabidopsis genome 61 MSH2 61 #q#.# [002] 61 proteins 61 3' UTR 61 VHL gene 61 microarray experiments 61 protein encoded 61 centromere 61 PALB2 61 kilobases 60 homologous recombination 60 RNA strand 60 missense mutations 60 non coding RNAs 60 PTPN# 60 mesoderm 60 homodimer 60 microRNA molecules 60 microRNAs miRNAs 60 transmembrane 60 mammalian genomes 60 membrane proteins 60 RNA strands 60 viral genomes 60 organism genome 60 micro RNAs 60 noncoding RNA 60 fusion protein 60 nucleosome 60 microdeletions 60 histone 60 hTERT 60 tumor suppressor gene 60 cyclin E 60 hypermethylation 60 dimers 60 transcriptomes 60 huntingtin 60 virulence genes 60 cDNA libraries 60 RNA polymerases 60 DLC1 60 CNVs 60 BAC clones 60 indel 60 methylated 60 tetramer 60 genes 60 E cadherin 60 microRNAs 60 transposable elements 60 H#K#me# 60 Fibroblasts 60 fibronectin 59 sequence homology 59 hexamers 59 prokaryotic 59 tetramers 59 ChIP Seq 59 mRNA expression 59 tyrosine phosphorylation 59 viral proteins 59 linkage disequilibrium 59 thymine T 59 lysine residues 59 Chromosomes 59 uPAR 59 vimentin 59 centromeres 59 LRAT 59 SNPs 59 gene sequences 59 MLH1 59 vertebrate genomes 59 glioblastoma cells 59 tRNAs 59 Sp1 59 apical membrane 59 adhesion molecule 59 somatic mutations 59 dynamin 59 orthologs 59 coiled coil 59 chromosome #q 59 transmembrane protein 59 histone H3 59 mutations 59 tumor suppressor genes 59 blastomeres 59 guanine G 59 KLF4 59 Golgi apparatus 59 constitutively active 59 retrotransposon 59 EZH2 59 transcriptional regulation 59 homodimers 59 chromatin 59 transmembrane proteins 59 transcriptional repressor 59 EphA2 59 protein kinases 59 insertions deletions 59 cadherin 59 #p#.# [002] 59 antisense RNA 59 genomes 59 bacterial genomes 59 bacterial genome 59 methylated DNA 59 transmembrane domains 59 E#F# 59 polypeptide 59 5 hmC 59 amino acid sequences 59 NF1 gene 59 PIP3 59 SOD1 59 antisense oligonucleotides 59 #p#.# [001] 59 EGFR protein 59 F actin 59 polypeptides 58 SOCS3 58 promoter methylation 58 gene 58 succinate dehydrogenase 58 nucleotide substitutions 58 Arabidopsis genes 58 activating mutations 58 gene amplification 58 proteins encoded 58 FGFR2 58 EGFR gene 58 genomic sequence 58 mutant protein 58 alleles 58 cis regulatory 58 PAK1 58 centromeric 58 methylation patterns 58 hypermethylated 58 nucleotide 58 TMPRSS2 ERG 58 serine protease 58 glycan 58 secretory pathway 58 chromosome #q#.# [001] 58 FLT3 58 MIF protein 58 FGFR1 58 dimer 58 WT1 58 tumor suppressor protein 58 PTEN gene 58 centrosomes 58 E3 ligase 58 TRF1 58 mutated genes 58 catalytic subunit 58 pyrimidine 58 amino acid substitutions 58 BRAF protein 58 glycosylation 58 BCR ABL 58 chromosomal rearrangements 58 Skp2 58 genomic instability 58 polymerase 58 tRNA synthetase 58 phosphorylated 58 ChIP chip 58 ciliated 58 ubiquitinated 58 FGFR3 58 dsRNA 58 array CGH 58 viral RNA 58 kD 58 helices 58 DLX5 58 VEGF receptor 58 sporadic ALS 58 evolutionarily conserved 58 genetic loci 58 A. thaliana 58 #q# [002] 58 CRISPR 58 Dicer 58 gene encoding 58 kDa 58 microRNA expression 58 miR #b [002] 58 caveolin 1 58 epitope 58 RNA polymerase II 58 transcriptionally 58 microtubule 58 proto oncogene 58 homologues 58 cytosine 58 single nucleotide polymorphism 58 JAK STAT 58 dsDNA 58 genome 58 extracellular domain 58 isoform 58 var genes 58 mitochondrial genome 58 dystrophin 58 presynaptic 58 ncRNA 58 TP# gene 58 ribozyme 58 recombination hotspots 58 c Myc 58 PrPSc 58 conserved sequences 58 5 hydroxymethylcytosine 58 eukaryote 58 fibrils 58 histone protein 58 MiRNAs 58 proteolysis 58 VNTR 58 Ubx 58 catenin 57 lincRNAs 57 Chromosome 57 oligonucleotide probes 57 heterodimers 57 polymerases 57 miR #a [002] 57 gene locus 57 cyclin D1 57 Cyclin D1 57 E1A 57 moieties 57 KRAS mutations 57 CGG repeats 57 ORFs 57 MMP9 57 EphB4 57 H#K# [002] 57 interfering RNAs 57 chromosomal 57 Caspase 57 Oct4 57 homozygosity 57 ALK mutations 57 GTPase 57 constitutively expressed 57 ErbB2 57 ERBB2 57 dimerization 57 glycosylated 57 cell adhesion molecules 57 radial glia 57 shRNA 57 MicroRNAs 57 Hox gene 57 small RNAs 57 V3 loop 57 RhoA 57 conformational changes 57 caspases 57 H2AX 57 5 methylcytosine 57 synuclein 57 TGF β 57 transcription factors 57 RecA 57 mitogen activated protein kinase 57 COL#A# 57 imprinted genes 57 fluorescently labeled 57 EGFP 57 TERT 57 synthase 57 HER2 receptor 57 thioredoxin 57 gene fusions 57 transgene expression 57 Rad# 57 #p# [001] 57 DNA polymerases 57 IGF 1R 57 maize genome 57 fission yeast 57 receptor molecule 57 plastid 57 FUS1 57 CDK4 57 guanine 57 reprogramming genes 57 eukaryotic 57 molecular scissors 57 biotinylated 57 dinucleotide 57 Argonaute proteins 57 neuroligins 57 EBNA1 57 anterior pituitary 57 RNAP 57 FMR1 57 nucleolin 57 survivin 57 cysteines 57 subunits 57 kinase domain 57 cohesin 57 amyloid fibrils 57 tyrosine kinase receptor 57 syntaxin 57 transfected cells 57 disulfide bond 57 KIAA# 57 microbial genomes 57 telomerase RNA 57 pRb 57 Vpu 57 CD# + [001] 57 thymine 57 TGF ß 57 subcellular localization 57 amyloid peptides 57 actin binding 57 nuclease 57 costimulatory 57 HAR1 57 primate genomes 57 GATA1 57 SATB1 57 phosphatases 57 overexpress 57 GAPDH 57 X inactivation 57 adenocarcinomas 57 integrins 57 Sanger sequencing 57 MECP2 gene 57 IGF1R 57 collagen fibrils 57 Cx# [001] 57 ERK2 56 intramolecular 56 transgene 56 c Myb 56 DNA polymerase 56 cell nuclei 56 exocytosis 56 mutant alleles 56 PKD1 56 segmental duplication 56 mitotic spindle 56 interfering RNA 56 transmembrane domain 56 microRNA molecule 56 cytoplasmic domain 56 globin gene 56 presenilin 56 fluorescent molecules 56 BMP4 56 nucleic acid molecules 56 diploid 56 polynucleotides 56 plasma membrane 56 CpG islands 56 trophoblasts 56 ultraconserved elements 56 CpG 56 DNMT1 56 proteomes 56 zebrafish genome 56 Eg5 56 chromatid 56 encode proteins 56 maternally inherited 56 FMR1 gene 56 condensin 56 microdeletion 56 trimeric 56 TSC1 56 exonuclease 56 gamma secretase 56 Vps# 56 actin filaments 56 structural rearrangements 56 chimpanzee genome 56 matrix metalloproteinase 56 GNAQ 56 mammalian genome 56 ligand binding 56 Methylation 56 phenotype 56 C1q 56 deacetylation 56 Polycomb 56 transcriptionally active 56 lymphoid tissue 56 protein fragment 56 D. melanogaster 56 piRNAs 56 ubiquitin ligase 56 Gag protein 56 autism susceptibility genes 56 megabases 56 c myc 56 cyclins 56 haplotype 56 allelic 56 immunoglobulin genes 56 p# mutations 56 chromosome #p#.# 56 microRNA miR 56 Htt 56 adenine 56 RNA 56 serine threonine kinase 56 HLA molecules 56 claudin 56 prion protein 56 #BP# 56 OCA2 gene 56 tyrosine kinase 56 loxP 56 DNA strands 56 orthologous 56 Rap1 56 phagocytosis 56 protein subunits 56 NKX#.# 56 chaperone proteins 56 inactivating mutations 56 mRNA molecule 56 cytokeratin 56 nonsense mutations 56 methylation 56 K ras mutations 56 breast epithelial cells 56 SIRT2 56 tumor specific antigen 56 SOD1 protein 56 mitochondrial DNA mtDNA 56 CHD7 56 alpha subunit 56 X chromosome 56 germline cells 56 enzymatic activity 56 MUC1 56 glycoprotein 56 paraffin embedded tissue 56 phosphorothioate 56 FOXO3a 56 NFKBIA 56 fibril 56 neurite outgrowth 56 Foxp3 56 LDL receptor 56 tumor suppressors 56 DEAR1 56 chromosome #q# [001] 56 metaphase 56 polypeptide chain 56 immunodominant 56 ribosomal proteins 56 S#A# [002] 56 microRNA 56 membrane protein 56 major histocompatibility complex 56 BDNF gene 56 #q# [001] 56 miR# 56 microcephalin 56 lamin 56 oncoprotein 56 miR #a [001] 56 heterozygosity 56 site directed mutagenesis 56 triphosphate 56 nucleotide bases 56 Argonaute 56 chromatin immunoprecipitation 56 CHO cells 56 IGFBP 56 haploid 56 Prox1 56 chemokine receptor 56 histologically 56 posttranslational modifications 56 cellular pathways 56 PML RARA 56 HMGA2 56 RAD# [001] 56 Arp2 3 56 Drosophila genome 56 serine 56 autosomal 56 PAX5 56 methyltransferase 56 peptide sequences 56 cellular prion protein 56 CXCL# 56 encodes protein 56 trans splicing 56 astrocytic 56 mitochondrial genomes 56 cell adhesion molecule 56 chromosomal instability 56 galactose 56 tumor antigen 56 genomic deletions 56 genomic rearrangements 56 DNase 56 coactivator 56 ERK1 56 Immunohistochemical analysis 56 primary cilium 56 SMN2 gene 56 differentially expressed genes 56 poly dA 56 dimeric 56 S#P# 56 p# mutation 56 chromosome #q# [002] 55 proteases 55 endocytic 55 stranded RNAs 55 homologous 55 granzyme B 55 meiotic recombination 55 mRNA encoding 55 ERK1 2 55 MDM2 55 antibody antigen 55 gene expression 55 ataxin 55 clonally 55 downregulated 55 nucleic acid sequence 55 3' 55 NSCLC tumors 55 peptides 55 mutation 55 Drosha 55 quantitative trait loci 55 Transcription factors 55 tau protein 55 phenotypes 55 MALAT1 55 telomerase reverse transcriptase 55 chimpanzee genomes 55 SNAREs 55 cytochrome b 55 stroma 55 mitotic 55 MyD# 55 mouse embryo 55 Aβ 55 MicroRNA 55 epithelial cell 55 CD#b 55 Wnt signaling pathway 55 HDAC 55 epigenome 55 soluble proteins 55 Fibroblast Growth Factor Receptor 55 carboxyl terminal 55 Akt1 55 RUNX3 55 transferrin receptor 55 ubiquitination 55 ligands 55 IFN gamma 55 ganglioside 55 transposon 55 mammalian cells 55 copper zinc superoxide 55 tubulin 55 HMGCR 55 antigen binding 55 epithelium 55 endocytosis 55 keratinocytes 55 tau gene 55 kinases 55 protein complexes 55 LKB1 55 MLL2 55 interneurons 55 protein 55 genetic alterations 55 outer membrane proteins 55 CCR7 55 neural cells 55 #p# [003] 55 exosome 55 iNOS 55 occludin 55 acetyl groups 55 CagA 55 messenger RNA mRNA molecules 55 chemotypes 55 gene expression patterns 55 noncancerous cells 55 breast carcinomas 55 C#Y 55 miRNA molecules 55 small interfering RNA 55 apoptotic 55 EGF receptors 55 DNA methyltransferase 55 acetylation 55 cDNA library 55 Fas ligand 55 HDACs 55 cytoplasmic 55 isotype 55 coexpression 55 VSV G 55 membrane fusion 55 melanocyte 55 binding affinities 55 nucleosomes 55 DNA demethylation 55 retrotransposons 55 PIK3CA 55 nestin 55 amino acid alanine 55 NFkB 55 lymphoid 55 calcineurin 55 Jhdm2a 55 mouse fibroblasts 55 Sox# 55 noncoding DNA 55 EAAT2 55 operon 55 CXCR4 55 IRAK1 55 SDS PAGE 55 SMN2 55 bases adenine 55 cytosolic 55 Chromosomal 55 CDH1 55 GSTP1 55 L1 retrotransposons 55 nucleolus 55 PCR amplification 55 spindle fibers 55 gene deletions 55 GLI1 55 antisense molecules 55 mutant proteins 55 alpha synuclein 55 lysates 55 transduced 55 HERV 55 stromal cells 55 CD#c 55 mtDNA 55 piggyBac 55 phylogenetically 55 DSBs 55 glycans 55 fluorescently tagged 55 phylogenetic analyzes 55 replicase 55 germline 55 sequenced genomes 55 Smad 55 quantitative RT PCR 55 miR 55 HtrA2 55 CENP E 55 ubiquitylation 55 Cdc# 55 TET2 55 alanine 55 Rab# 55 superfamily 55 ZNF# 55 subunit 55 lacZ 55 cathepsins 55 tRNA 55 MEK1 55 cell lysates 55 chloroplast 55 beta globin 55 tropomyosin 55 granule cells 55 breast cancer genes BRCA1 55 homeobox gene 55 provirus 55 androgen receptor AR 55 rs# [001] 55 DNA methylation patterns 55 endogenous retroviruses 55 mosaicism 55 Bcr Abl 55 phosphorylate 55 fibrillar 55 coding RNA 55 Fig. 1D 55 collagen VII 55 beta catenin 55 transmembrane receptor 55 phosphatidylinositol 55 SMN1 gene 55 MMPs 55 chromophore 55 secreted proteins 55 Rab5 55 PDGFR 55 paxillin 55 glycolipids 54 thrombospondin 54 gene expression profiles 54 neurexin 54 CD1d 54 N cadherin 54 R#W [002] 54 tyrosine kinases 54 colorectal tumor 54 mesothelin 54 5' triphosphate 54 ribosomal protein 54 RNA binding 54 procaspase 3 54 palladin 54 cystic fibrosis transmembrane conductance 54 cytokinesis 54 gene expression microarrays 54 beta amyloid peptide 54 neuroepithelial cells 54 Cathepsin B 54 methyltransferases 54 virions 54 membrane proximal 54 fibroblast cells 54 human genome 54 eukaryotic genomes 54 fig. S1 54 Huntingtin 54 Dpp 54 causal variants 54 transfected 54 Activating mutations 54 Ago2 54 reverse transcriptase 54 acinar 54 CDKN2A 54 amino terminal 54 receptor tyrosine kinase 54 oligo 54 activating mutation 54 overexpressed 54 orthologous genes 54 lipoxygenase 54 chromosomal translocations 54 EpCAM 54 Transcriptome 54 chromosome #p# [001] 54 hepatoma 54 transcriptional machinery 54 Histone 54 polymorphisms 54 thymocytes 54 subfamilies 54 SOD1 gene 54 AMPA receptors 54 c MYC 54 LRP6 54 Pten 54 CTCF 54 DHFR 54 phosphoprotein 54 receptor gene 54 SCN5A 54 oncoproteins 54 aggrecan 54 sister chromatids 54 invadopodia 54 chromosomal deletions 54 uracil 54 BRAF mutation 54 NHEJ 54 histone H4 54 cadherins 54 oligomer 54 EGFRvIII 54 BRAF gene 54 somites 54 activin 54 beta subunit 54 Nedd4 54 IDH1 gene 54 Sox2 54 mesenchyme 54 Neuregulin 1 54 p# [001] 54 IgG1 54 messenger RNA molecules 54 bcl 2 54 upregulated 54 cytoplasmic tail 54 photosystem II 54 SMAD4 54 IDH1 54 microsatellite markers 54 caveolae 54 intracellular proteins 54 endoplasmic reticulum 54 prion proteins 54 SPINK1 54 uncharacterized genes 54 subcellular 54 Hsp# [001] 54 synthases 54 endonucleases 54 Cre recombinase 54 ChIP seq 54 amyloid deposits 54 Wwox 54 transcriptional activation 54 interactome 54 mtDNA mutations 54 lamina 54 adherens junctions 54 GlcNAc 54 chromosomal rearrangement 54 mutational analysis 54 HER2 HER3 54 androgen receptor 54 multiprotein complex 54 T#I [002] 54 Clusterin 54 familial ALS 54 ligase 54 Kv#.# 54 HCV replication 54 suppressor gene 54 secretory cells 54 capsid proteins 54 peptide antigens 54 B Raf 54 VEGFR1 54 PGCs 54 histones 54 eIF 4E 54 Dicer enzyme 54 CDH# 54 endostatin 54 functional dystrophin protein 54 forkhead 54 cell organelles 54 #S subunit 54 conformational 54 cellulases 54 germline mutation 54 PrP 54 TTR gene 54 colocalization 54 transiently transfected 54 TMEM#B 54 intracellular signaling 54 Supplemental Figure 54 beta globin gene 54 vesicle fusion 54 cell cytoplasm 54 acyl CoA 54 kinase gene 54 Microtubule 54 caveolin 54 phenotypic variation 54 Olig2 54 intercellular adhesion molecule 54 lincRNA 54 MTHFR gene 54 STAT3 54 PIP2